
Designing a self-sustaining food forest is about more than planting a few fruit trees. It’s about replicating the natural world by incorporating multiple layers—each playing a role in creating a thriving ecosystem. Among these, the sub-canopy layer (Layer Two) is especially important. This layer sits just below the tallest canopy trees, providing shade, supporting young fruit trees, and acting as a bridge between the upper tree canopy and the shrub layer.
In this guide, we’ll explore sub canopy strategies, the best fruit trees and shrubs for layer two, and how to create a thriving food forest filled with edible plants, medicinal plants, and beneficial insects.
Introduction to Food Forests
A food forest is a permaculture garden designed to mimic a natural forest while producing a wide variety of edible and medicinal plants. By stacking different plant layers—canopy layer, sub-canopy layer, shrub layer, herbaceous layer, ground cover, creeper layer, and underground layer—gardeners create a self-sustaining ecosystem that requires minimal maintenance.
Key benefits of food forests:
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Provide edible plants and medicinal plants year-round.
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Improve soil fertility and soil health through nitrogen fixing plants.
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Attract pollinators and beneficial insects that deter pests naturally.
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Function as a sustainable food forest adaptable to both temperate climates and tropical regions.
Learn more about food forest design principles
Understanding the Layers of a Food Forest
A thriving food forest works in layers, much like a natural forest.
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Canopy Layer – Tall trees such as towering nut trees or canopy fruit trees.
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Sub-Canopy Layer – Smaller fruit trees and nitrogen fixing shrubs that support young growth.
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Shrub Layer – Berry bushes, dwarf fruit shrubs, and perennial plants.
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Herbaceous Layer – Short plants like comfrey plants or other herbaceous plants.
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Ground Cover Layer – Low-growing ground cover plants such as creeping thyme.
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Creeper Layer – Climbing plants like beans and vines.
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Underground Layer – Root crops and soil microbes that maintain healthy soil.
Each layer improves soil fertility, supports diverse plants, and builds a balanced ecosystem.
The Importance of the Sub-Canopy Layer
The sub-canopy layer is essential in food forest design because:
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It shades and protects young fruit trees and neighboring plants.
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Supports nitrogen fixing plants that enrich soil with nitrogen for soil microbes.
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Provides habitat for other beneficial insects and birds.
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Helps suppress weeds and retain soil moisture.
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Supports medicinal plants and perennial species that thrive under light shade.
In a beacon food forest design, this layer acts as the most productive fruit zone, bridging tall trees and ground-level growth.
Choosing the Best Fruit Trees for the Sub-Canopy Layer
When selecting fruit trees for layer two, gardeners should consider:
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Climate suitability – Some fruit orchards thrive in temperate climates, while others need tropical heat.
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Soil health – Incorporate nitrogen fixing shrubs and perennial plants.
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Space management – Choose dwarf or semi-dwarf fruit trees for small gardens.
Popular Sub-Canopy Fruit Trees & Shrubs:
|
Sub-Canopy Trees |
Shrubs & Support Plants |
Benefits |
|---|---|---|
|
Apple trees |
Comfrey plants |
Improves soil fertility, attracts pollinators |
|
Pear trees |
Nitrogen fixing shrubs (Siberian pea shrub) |
Builds healthy soil |
|
Nut trees (hazelnut, chestnut) |
Flowering plants (purple flowers, thyme) |
Attracts beneficial insects |
|
Persimmon trees |
Berry shrubs (currants, gooseberries) |
Provides edible plants & wildlife food |
Explore more on suitable food forest trees
Creating a Fruit Tree Guild
A fruit tree guild is a permaculture strategy where trees and shrubs are supported by companion planting. Around one central fruit tree, gardeners add:
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Nitrogen fixing plants like beans and clover.
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Ground cover plants such as creeping thyme to deter weeds.
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Flowering plants that attract pollinators.
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Herbaceous plants like comfrey for soil fertility.
This creates a self-sustaining food forest with minimal maintenance and high productivity.
Companion Planting in the Sub-Canopy Layer
Companion planting strengthens the sub-canopy by combining diverse plants to:
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Deter pests naturally.
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Encourage beneficial insects that protect fruit trees.
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Improve soil fertility and prevent soil erosion.
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Enhance biodiversity for a more thriving ecosystem.
Example: Planting comfrey plants and creeping thyme under apple trees improves soil structure and attracts bees.
Building Healthy Soil
Healthy soil is the foundation of a sustainable food forest. Techniques include:
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Mulching with wood chips, leaves, and grass clippings.
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Composting organic waste to build rich humus.
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Cover cropping with legumes to fix nitrogen.
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Adding perennial plants and plant beans for soil fertility.
By building healthy soil, gardeners enhance soil microbes, water retention, and resilience against erosion.
Learn about soil management in permaculture
Managing the Canopy and Sub-Canopy Layers
The tree canopy requires management to ensure light reaches the sub-canopy. Techniques include:
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Prune trees to balance airflow and sunlight.
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Coppicing and thinning to encourage younger growth.
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Maintaining healthy interaction between canopy trees and sub-canopy trees for soil fertility.
A well-managed canopy ensures a productive and balanced sub-canopy zone.
Enhancing Biodiversity in the Sub-Canopy Layer
Diversity leads to resilience. Include:
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Native plants adapted to your region.
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Nitrogen fixing plants for soil fertility.
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Flowering plants with purple flowers to attract pollinators.
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Climbing plants like beans for vertical integration.
This encourages beneficial insects, creates habitat for wildlife, and strengthens your own food forest.
Water Management in the Sub-Canopy Layer
Effective water management sustains the sub-canopy layer:
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Rain gardens to capture runoff.
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Mulching to retain moisture.
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Planting drought-resistant species such as comfrey and creeping thyme.
Proper water management reduces soil erosion, maintains soil structure, and strengthens resilience in vegetable gardens and food forests.
Common Challenges in the Sub-Canopy Layer
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Pests & diseases – mitigated by companion planting.
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Soil erosion – reduced with ground cover plants.
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Weeds – suppressed by mulching and dense plantings.
By designing for resilience, you ensure a self-sustaining ecosystem that thrives with little human intervention.
Food Forests and Ecosystem Services
A sustainable food forest provides ecosystem services such as:
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Air and water filtration.
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Carbon sequestration (helping mitigate climate change).
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Habitat for wildlife and beneficial insects.
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Soil formation and fertility improvement.
These benefits create long-term ecological and community value.
Creating a Food Forest in Small Spaces
Even in a small backyard, you can create a mini food forest by stacking layers wisely:
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Use dwarf or semi-dwarf fruit trees in the sub-canopy layer.
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Mix in ground cover plants like thyme.
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Add nut trees, berries, and herbaceous plants for diversity.
A small food forest can function as a fruit orchard, vegetable garden, and wildlife habitat simultaneously.
Final Words: The Benefits of a Sub-Canopy Food Forest

The sub-canopy layer is the heartbeat of a thriving food forest. It supports young fruit trees, enhances soil fertility, and creates habitat for pollinators and beneficial insects. By applying sub canopy strategies, gardeners can design a balanced ecosystem that produces abundant edible plants, supports wildlife conservation, and builds a self-sustaining ecosystem.
If you want to take the next step, check out our detailed guide on Soil Salinity Solutions to understand how to maintain healthy soil and improve your own food forest.
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